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Sean Nguyen

Sean Nguyen

Data scientist (PhD) building reproducible analyses and data products

Joined January 2025
Favicon imagegithub.com
Favicon imageorcid.org
Favicon imagescholar.google.com

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Summary

Builds reproducible, researcher-facing software to analyze complex biological data — Sean develops open-source tools (notably tidyNano) that convert raw NTA outputs into tidy dataframes and provide interactive visualization (shinySIGHT), enabling reproducible analyses of nanoparticle and extracellular vesicle data. github+1
Academic researcher in reproductive immunology and placental biology — as a PhD and co-author on multiple publications, Sean has contributed experimental and computational work on placental extracellular vesicles and maternal immune responses during pregnancy. google+1
Bridges research and productized analytics in small organizations — Sean has translated academic skills into industry practice (S2G), acting as a sole/lead data science practitioner deploying tools like Posit Connect to operationalize analyses and share interactive reports with stakeholders. posit+1
Combines machine learning and practical NLP/engineering for applied tools — beyond academic software, Sean has built applied projects such as InfringeMark, which uses NLP libraries and XGBoost to assess trademark similarity and filing recommendations. github

Work

Education

Projects

Writing

Quantifying murine placental extracellular vesicles across gestation and in preterm birth data with tidyNano: A computational framework for analyzing and visualizing nanoparticle data in R

January 1, 2019

PLOS ONE paper describing the tidyNano computational framework for analyzing and visualizing nanoparticle tracking analysis (NTA) data in R, applied to murine placental extracellular vesicle data.

Favicon imagescholar.google.com

Immune response to a model shared placenta/tumor-associated antigen reduces cancer risk in parous mice

January 1, 2017

Study in mice showing that gestational exposure to a shared placenta/tumor antigen (OVA) elicits antigen-specific CD8+ T cells during pregnancy which can persist and are associated with delayed growth of tumors expressing the same antigen after pregnancy.

Favicon imagepmc.ncbi.nlm.nih.gov

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