Pratik Dutta

Bioinformatics paper describing TransTEx, a transcript-level tissue-specificity scoring method and accompanying database for grouping transcripts into expression classes across human tissues.

Preprint describing DNABERT-2, an efficient genome foundation model that uses BPE tokenization and presents the Genome Understanding Evaluation (GUE) benchmark across multi-species genome tasks.

Journal article presenting DeepMOIS-MC, an outcome-guided multi-omics integrative subtyping framework that maximizes correlation among omics views to identify prognostically relevant cancer subtypes; includes code availability.

Analytical Chemistry paper describing scMIST single-cell multiplex in situ tagging technology and application of machine learning (random forest) for classification in a sepsis model.

IEEE/ACM Transactions article describing DeePROG, a self-attention based deep multi-modal model for gene prognosis that fuses heterogeneous omics data; code available on GitHub.

Scientific Reports article presenting a protein-protein interaction-based generative model to improve gene clustering accuracy using weak supervision sources.